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Urinary infections

Most settle with a course of antibiotics, but three things are worth telling apart: whether the infection stayed in the bladder or climbed to the kidney, whether something is enabling it, and when it stops being reasonable to keep treating episodes without looking for the cause. In men, moreover, no urinary infection is routine.

Dr. Eduardo Amaya Fragoso

Written and reviewed by

Dr. Eduardo Amaya Fragoso

Urologic Surgeon · Fellowship in Urologic Oncology (Centro Médico Nacional Siglo XXI · UNAM) · International Fellow in Robotic Urology (Instituto Israelita Albert Einstein, Brazil)

Professional Licence 10407470 · Specialty Licence 12943253 · CONAMEU 1918 (valid 2022–2027). Practice at Hospital San José, Hermosillo, Sonora.

Last reviewed: 23 July 2026

The essentials

  • Cystitis and pyelonephritis are not the same. One is a nuisance; the other can put you in hospital. Fever and flank pain mark the boundary.
  • In men, any urinary infection counts as complicated and warrants investigation. It is not a "normal" infection: something is enabling it.
  • An infection is called recurrent at two episodes in six months or three in a year. That threshold changes management entirely.
  • Bacteria in the urine without symptoms is almost never treated. Treating it breeds resistance and achieves nothing.
  • Not every discomfort on passing urine is an infection. When the culture comes back negative time after time, the answer lies elsewhere.

Cystitis and pyelonephritis

The difference lies in how far the infection climbed: whether it stayed in the bladder or reached the kidney. And that difference decides everything from the treatment to whether you need admitting.

 Cystitis (bladder)Pyelonephritis (kidney)
Dominant symptomBurning on passing urine, urgency, a constant urge with little volumeHigh fever with rigors and a sense of being generally unwell
Where it hurtsLower abdomen, above the pubic boneIn the flank or lower back, on one side only
FeverUsually notYes, and it is the defining feature
Nausea and vomitingNoCommon
Appearance of the urineCloudy, foul-smelling, sometimes bloodyThe same, but the general picture counts for more than the urine
How it is treatedOral antibiotics, a short courseA long course, sometimes intravenous and with hospital admission
ImagingRarely neededFrequently yes, to rule out obstruction or an abscess
RiskUnpleasant, rarely dangerousIt can escalate as far as sepsis

Warning signs: when not to wait

Seek help immediately, without waiting for an appointment, if any of these appear:

  • Fever with rigors, above all if you are shivering uncontrollably.
  • Severe pain in the flank or back, on one side only.
  • Vomiting that prevents you keeping down fluids or medication.
  • Confusion or disorientation, especially in older people: it may be the only sign.
  • Stopping passing urine or passing only minimal amounts.
  • Fever together with a known stone in the kidney or ureter. An obstructed, infected kidney is a genuine emergency: antibiotics will not resolve it, it has to be decompressed.
  • Any urinary fever if you are diabetic, immunosuppressed, have a solitary kidney or are pregnant.

Complicated and uncomplicated

This is the classification that decides how deeply to investigate, and it is frequently misread. "Complicated" does not mean severe: it means there is a factor enabling it or making it harder to treat.

Only cystitis in a woman who is not pregnant, with no abnormality of the urinary tract and no condition compromising her defences, counts as uncomplicated. Everything else is complicated:

  • Any urinary infection in a man. The male urethra is long and the urinary tract better protected; an infection appearing forces the question of what allowed it.
  • Pregnancy.
  • Structural or functional abnormalities: stones, obstruction, prostatic enlargement, a bladder that empties poorly, reflux.
  • Catheters, whether long-term or recent.
  • Poorly controlled diabetes, immunosuppression, kidney failure.
  • A transplanted or solitary kidney.
  • Infection acquired in hospital or caused by resistant bacteria.

Why I insist on the point about men

A young woman can have cystitis with no underlying cause at all: it is common and means nothing. In men it is not like that. A male urinary infection is usually pointing at something: an obstructing prostate, a bladder that does not empty fully, a stone, a urethral stricture or, less often, a tumour.

So when a man is given antibiotics for a urinary infection and nobody arranges any investigation afterwards, the symptom was treated and the cause left untouched. It will come back.

Recurrent infection

There is a specific definition, and it is worth knowing because it marks the point at which giving further courses of antibiotics without investigating stops being reasonable:

  • Two episodes in six months, or three in twelve months, confirmed by urine culture.
  • Relapse is when the same bacterium returns within a few weeks: it suggests the infection was never eradicated, or that there is a reservoir —a stone, a prostate, a catheter.
  • Reinfection is when a different bacterium returns later: it points to exposure and host defence factors rather than a persistent focus.

The distinction matters because relapse obliges you to look for the cause, while reinfection is addressed with preventive measures.

What is investigated, and when

  • Urine culture with sensitivities before starting antibiotics, whenever the picture is not simple cystitis in a young woman.
  • Ultrasound of the kidneys and bladder, including measurement of what remains in the bladder after passing urine. It is simple, non-invasive and settles many questions.
  • CT in pyelonephritis that does not improve within 48 to 72 hours, or where obstruction or an abscess is suspected.
  • Cystoscopy in selected cases: recurrent infections with no clear cause, or if there was blood in the urine outside the infective episode.

Two errors I see frequently

Treating bacteria without symptoms. Finding bacteria on a routine culture, with no discomfort, is called asymptomatic bacteriuria and in most people it is not treated. The exceptions are pregnancy and certain planned urological procedures. Treating it outside those prevents nothing and does select for resistant bacteria.

Repeating the antibiotic left over from last time. It is the quickest route to a resistant infection, and it makes the next culture come back negative even though the infection is real. If it happens again, the right step is a culture first.

What helps to prevent them

  • Drinking more fluid. It is one of the few measures a clinical trial has shown reduces recurrences, and it costs nothing.
  • Passing urine after intercourse and not holding on.
  • Correcting the underlying factor: treating prostatic obstruction, removing an unnecessary catheter, dealing with a stone, controlling diabetes. In men this is what genuinely changes the outlook.
  • Vaginal oestrogen in postmenopausal women with recurrent infections: it is among the best-supported measures.
  • Low-dose antibiotic prophylaxis, in selected cases and for a limited period.

On cranberry and supplements

Cranberry —on its own or in capsules— is widely recommended and even more widely sold. The evidence is weak and inconsistent: some studies suggest a small benefit in women with repeated infections, others find none at all. It does no harm and is not expensive, so I do not object to your taking it. What must not happen is that it replaces investigating the cause.

Much the same applies to D-mannose: promising results, but insufficient to recommend it as established treatment. No supplement corrects an obstructing prostate or dissolves a stone.

When it is not an infection

Some patients have spent years receiving antibiotics for "infections" that were never confirmed. If your cultures come back negative repeatedly, other causes of the same symptom deserve considering:

  • Interstitial cystitis, or bladder pain syndrome.
  • Urethritis from sexually transmitted infections, which need different testing and different treatment.
  • Chronic prostatitis in men, which causes burning and urgency with no demonstrable infection.
  • Overactive bladder, which produces urgency and frequency without pain on passing urine.

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Dr. Eduardo Amaya Fragoso

Urologic Oncologist · Robotic Surgeon

Dr. Eduardo Amaya Fragoso

Have you had several episodes in the same year?

Two infections in six months or three in a year stop being bad luck. A consultation with a urine culture and an ultrasound usually finds the factor allowing them, which is the only thing that breaks the cycle.

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Where I practise

Hospital San José, Hermosillo

Suite 301 · Module H · 3rd floor
Blvd. José María Morelos 340, Col. Bachoco, ZIP 83148
Hermosillo, Sonora

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662 111 0782

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Note

This information is for general guidance and replaces neither a medical consultation nor emergency care. If you have fever together with flank pain, go to an emergency department immediately: do not wait for an appointment.

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