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HPV in men

Almost every man comes into contact with human papillomavirus at some point, and almost all of them clear it without ever knowing. The problem is not the virus itself but telling apart which lesions are harmless, which are premalignant, and which route leads to penile cancer — a cancer that in more than half of cases has nothing to do with HPV at all.

Dr. Eduardo Amaya Fragoso

Written and reviewed by

Dr. Eduardo Amaya Fragoso

Urologic Surgeon · Fellowship in Urologic Oncology (Centro Médico Nacional Siglo XXI · UNAM) · International Fellow in Robotic Urology (Instituto Israelita Albert Einstein, Brazil)

Professional Licence 10407470 · Specialty Licence 12943253 · CONAMEU 1918 (valid 2022–2027). Practice at Hospital San José, Hermosillo, Sonora.

Last reviewed: 23 July 2026

The essentials

  • HPV is the most common sexually transmitted infection in the world. Most men acquire it at some point and clear it on their own, without ever knowing and without consequences.
  • Genital warts are not cancer and do not turn into cancer. They are caused by low-risk HPV types, different from the ones that cause tumours. This is the confusion that generates the most anxiety, and it is worth clearing up straight away.
  • The cancer risk comes from the high-risk types, above all type 16, which can produce premalignant lesions in the skin of the penis.
  • Around 60% of penile cancers have nothing to do with HPV. They arise from a different route, almost always from lichen sclerosus and chronic inflammation.
  • The practical rule that matters: any penile lesion that does not heal, changes or comes back must be biopsied. Delay in seeking help, not the disease itself, is what costs the most in prognosis.

What HPV is and what it does in men

Human papillomavirus is not one virus but a family of more than two hundred types. A handful of them infect genital skin, and there they divide into two groups that do very different things:

  • Low-risk types, chiefly 6 and 11. They cause genital warts. They are a nuisance, they are contagious and they recur, but they do not cause cancer.
  • High-risk types, led by 16 and followed by 18, 31, 33, 45, 52 and 58. They hardly ever cause warts: when they do cause a problem, they do it silently, as flat lesions that can go years without symptoms.

In men, the vast majority of infections are transient: the immune system clears them within one or two years. Only a small fraction persist, and only a fraction of those go on to produce a premalignant lesion.

Something worth knowing before searching online

In men there is no HPV screening test equivalent to the cervical smear. No validated study is recommended as routine for a man without lesions, and an isolated positive result would not change management. What does help is examination of the genital skin and biopsy of any suspicious lesion. If you are offered an HPV panel without having a lesion, ask what would be done differently with the result.

Genital warts

These are the most visible and the most common manifestation. They appear as soft raised lesions, skin-coloured or slightly paler, with an irregular surface, on the shaft of the penis, the glans, the foreskin, the urinary meatus or the perianal area. There may be one or several, and they can grow in clusters.

  • They are treated with medication applied to the lesion or with procedures that remove it: cryotherapy, diathermy, CO₂ laser or excision.
  • They recur frequently, in around one in four people, because treatment removes the lesion but not always the virus in the neighbouring tissue. It does not mean the treatment failed.
  • Having warts does not mean you also have a high-risk type, nor that you are on your way to a cancer.

Premalignant lesions of the penis

When a high-risk type persists, it can produce penile intraepithelial neoplasia, or PeIN. These are abnormal cells confined to the surface layer of the skin: they are not yet cancer, because they have not crossed the membrane that separates them from the deeper tissue, but they can become cancer if left to evolve.

They usually appear as red, velvety, whitish or pigmented patches on the glans or the foreskin. They are easily mistaken for balanitis, dermatitis or a fungal infection, which is why many are treated with creams for months before being biopsied.

If your pathology report uses older names

Until recently these lesions were called erythroplasia of Queyrat when on the glans, Bowen disease when on the shaft, or simply carcinoma in situ. The World Health Organization classification of 2022 stopped recommending those terms and brought them together under PeIN, divided according to their origin. If your report carries one of the older names, it is not wrong: it simply predates the update.

Two different routes to penile cancer

This is the concept that makes sense of everything else, and the one that is almost never explained. Since 2016, and reinforced in the 2022 classification, penile cancer is recognised as having not one origin but two, with different precursor lesions, different patients and different prevention.

 HPV-associated routeHPV-independent route
Approximate shareAbout 40% of casesAbout 60% of cases
Precursor lesionHPV-associated PeIN: basaloid, warty or mixedDifferentiated PeIN
What causes itPersistent infection with high-risk HPV, above all type 16Lichen sclerosus, phimosis, chronic inflammation of the foreskin
Usual ageYounger patientsOlder patients
Where it appearsMore often on the glans and coronal sulcusMore often on the foreskin
How it is told apartBlock-type positive p16 stainingNegative p16
How it is preventedHPV vaccinationTreating lichen sclerosus and considering circumcision

In fairness to the evidence

The balance between the two routes varies widely by region and by published series: some studies attribute half of all cases to HPV, others barely 10%. The figure used as a global reference is close to 40%, but it should be taken as an order of magnitude rather than an exact number.

What is firmly established is the structure: these are two different diseases that end up looking alike, which is why preventing one does not protect against the other. Vaccination does not remove the risk arising from lichen sclerosus, and treating lichen sclerosus does not protect against HPV.

For now there are no established differences in treatment or prognosis between the two types, although evidence is beginning to emerge that HPV-associated tumours may respond better to radiotherapy and immunotherapy. This is an area still in motion.

Lichen sclerosus: the route nobody mentions

This is a chronic inflammatory condition of the genital skin that hardens and whitens the foreskin and glans, and which over the years narrows it until it produces phimosis. It has nothing to do with HPV or with sexual activity.

It matters because it is the main gateway to the HPV-independent route: a long-standing lichen sclerosus can give rise to differentiated PeIN, and from there to a carcinoma. Untreated lichen sclerosus is a real and modifiable risk factor, and in many cases circumcision is both the definitive treatment and the preventive measure.

Which lesions must be biopsied

If you take away a single sentence from this guide, let it be this one: a penile lesion that has gone weeks without healing is not treated blindly any longer, it is biopsied.

  • Any lesion that does not resolve after four to six weeks of appropriate treatment.
  • Red, whitish, velvety or pigmented patches that persist.
  • Lesions that bleed, ulcerate, harden or grow.
  • Warts with an atypical appearance, irregular pigment or an indurated base.
  • Any lesion beneath a foreskin that cannot be retracted: what cannot be seen cannot be monitored.
  • Areas of lichen sclerosus that change in appearance or thicken.

Penile cancer: why delay is the problem

It is an uncommon tumour, though less uncommon in Mexico and Latin America than in Europe or the United States. It presents as a lesion that will not heal, an ulcer, a lump or a thickening, almost always on the glans or the foreskin.

What determines the outlook is not so much the size of the tumour as whether it has reached the lymph nodes in the groin. And this is where the factor that does depend on the patient comes in: the delay in seeking help. Months often pass between the lesion appearing and the first consultation, almost always out of embarrassment or fear of what will be found.

What I want you to take from this section

Caught early, penile cancer is often treated with organ-sparing surgery: topical treatments, laser, removal of the lesion or of the glans, preserving function and appearance. Caught late, the options narrow and much larger operations become necessary. The difference between those two scenarios is usually measured in months of waiting, not in how aggressive the tumour is. Showing a lesion to a urologist costs five minutes of awkwardness.

What actually helps to prevent it

  • HPV vaccination. It covers the most frequent high-risk types and also those that cause warts. It is more effective the earlier it is given, ideally before sexual activity begins, but it can also be indicated in adults. It prevents new infections; it does not treat existing ones nor remove an established lesion.
  • Circumcision. It reduces the risk of penile cancer, particularly where there is phimosis or lichen sclerosus, and it makes hygiene and skin monitoring easier.
  • Stopping smoking. Tobacco is an independent risk factor and is frequently left out of this conversation.
  • Treating chronic inflammation. Recurrent balanitis, lichen sclerosus and phimosis are not minor nuisances: they are the ground on which these lesions develop.
  • Condoms reduce transmission, though they do not eliminate it, because the virus is also present on skin the condom does not cover.

If your partner has been diagnosed with HPV

This is a frequent reason for consultation and it almost always arrives loaded with recrimination. A few things are worth clarifying:

  • There is no way to know who transmitted it or when. The virus can remain dormant for years without any sign, so a recent diagnosis does not indicate recent infidelity.
  • There is no treatment that eliminates the virus in someone without lesions. What is treated are the lesions, not the infection.
  • The sensible course is an examination of the genital skin and biopsy only of what warrants it.
  • Vaccination remains useful even where there has been prior exposure, because it protects against the types not yet acquired.

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Dr. Eduardo Amaya Fragoso

Urologic Oncologist · Robotic Surgeon

Dr. Eduardo Amaya Fragoso

Do you have a lesion that will not heal?

You do not need to know whether it matters: that is what the consultation is for. A few minutes of examination and, where appropriate, a biopsy settle in days a doubt that many carry for months.

Available in person and by video consultation

Where I practise

Hospital San José, Hermosillo

Suite 301 · Module H · 3rd floor
Blvd. José María Morelos 340, Col. Bachoco, ZIP 83148
Hermosillo, Sonora

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662 111 0782

Hours

Monday to Friday · 8:00 AM – 8:00 PM

Saturday · 9:00 AM – 2:00 PM

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Note

This information is for general guidance and does not replace a medical consultation: do not make decisions based on this text without discussing them with your urologist.

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